Salam Academy
Paper 2 · Module

The control of gene expression

3 subtopics≈ 145 min in total
  1. Recombinant DNA and PCR

    To make recombinant DNA: obtain the gene by restriction enzymes (cut at specific palindromic sites, leaving sticky ends), by reverse transcriptase (mRNA → cDNA, without introns) or by synthesis. Cut a plasmid vector with the same restriction enzyme, so sticky ends are complementary; DNA ligase joins them. Add a promoter so the gene is transcribed. Transform host cells (heat shock with Ca²⁺, electroporation). Identify transformed cells with marker genes (antibiotic resistance, GFP fluorescence). PCR copies DNA: denature at 95 °C, anneal primers at ~55 °C, extend at 72 °C with Taq polymerase; each cycle doubles the DNA (2n2^n). Gel electrophoresis separates DNA fragments by size: DNA (negative phosphates) moves to the anode; smaller fragments travel further.

    ≈ 50 min
  2. Genetic engineering applications

    Recombinant human proteins made by GM bacteria, yeast or animals: insulin, factor VIII (haemophilia), adenosine deaminase; purer and more plentiful than animal sources. Gene therapy adds a working allele to treat genetic disease (e.g. SCID, cystic fibrosis) using viral vectors or liposomes; somatic therapy affects only the patient, germ-line would be inherited (banned in humans). Genetic screening detects alleles (e.g. BRCA1, CF) with DNA probes; genetic counselling helps people decide. PGD screens IVF embryos. GM crops: Bt maize (insect resistance), herbicide-tolerant soya, Golden Rice (β-carotene for vitamin A). DNA profiling uses variable repeat sequences, PCR and electrophoresis for forensics and paternity. Ethical issues: safety, gene flow to wild plants, monopolies, consent, designer babies.

    ≈ 45 min
  3. Gene expression and stem cells

    Every cell has the same genes, but different cells express different ones. Stem cells are undifferentiated: totipotent (any cell, including placenta; early embryo), pluripotent (any body cell; embryonic stem cells), multipotent (a range, e.g. bone marrow → blood cells), unipotent (one type). Induced pluripotent stem (iPS) cells are made by adding transcription factor genes to adult cells. Transcription factors bind promoters to start or stop transcription; oestrogen enters cells and binds a receptor, releasing a transcription factor. RNA interference (siRNA) destroys specific mRNA, blocking translation. In prokaryotes the lac operon switches on lactose-digesting genes only when lactose is present. Epigenetics: heritable changes without changing base sequence: DNA methylation (silences genes) and histone acetylation (opens chromatin, activates). Cancer: mutated oncogenes (overactive) or tumour suppressor genes (inactive), sometimes by abnormal methylation.

    ≈ 50 min